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Cell-based Analysis

Fluorescent Subcellular Localisation Vectors and Reporter Gene Assays

Track subcellular structures and quantify gene activity with matched reporter tools

Two questions come up constantly in cell biology. Where does a protein sit inside the cell, and how strongly does a gene switch on. Subcellular localisation vectors answer the first for you, and reporter gene assays answer the second.

Cyto-Tracer vectors fuse copGFP to an organelle-specific signal peptide, marking a single compartment, organelle, vesicle, or structure in your living cells. The constructs work in transient transfection, and they package into virus to build a stable tracer line in primary, tumour, or stem cells. The MSCV promoter suits stem and haematopoietic cells, and CMV covers the easier cell types you work with.

copGFP comes from the copepod Pontellina sp., with human-optimised codons for strong expression. It is monomeric, non-toxic, and non-aggregating, and it stays stable from pH 4 to pH 12 with no added cofactors. Brightness runs about 1.3 times that of EGFP, with excitation at 482 nm and emission at 502 nm. An untagged GFP vector is available when you want to fuse your own tag.

Reporter gene assays turn promoter and pathway activity into a signal you can measure. Secrete-Pair kits detect GLuc alone, or GLuc paired with SEAP for a dual read. Both reporters are secreted, so you sample live cultures without lysing cells. Luc-Pair kits cover firefly and Renilla luciferase, singly or as a duo, in three formats. The HT (High Throughput) and 2.0 kits hold the signal stable over time, so sample-to-sample variation from signal decay stays low when you assay a large number of samples. The HS (High Sensitivity) kits give maximal signal intensity instead, with the trade-off that the signal decays faster under normal laboratory conditions, which suits smaller batches unless sample injectors are used.

Choosing the right fluorescent or reporter system

  1. You want to watch an organelle or structure move in live cells. A Cyto-Tracer copGFP fusion vector targeted to that compartment images directly in your cells, with no chemical stain needed.
  2. You need a stable, heritable tracer line. Cyto-Tracer constructs package into lentivirus, giving a selectable copGFP line in the cell type you work with, including stem and primary cells.
  3. You are transfecting stem or haematopoietic cells. The MSCV promoter construct is the better fit for those cells. CMV covers other, easier-to-transfect types.
  4. You need to measure promoter or pathway activity without lysing cells. Secrete-Pair GLuc and GLuc/SEAP kits let you sample your medium directly at each time point.
  5. You are running a large batch of luciferase assays. HT (High Throughput) and 2.0 kits hold signal stable across many samples. HS (High Sensitivity) kits give maximal signal from a small batch.

Applications

Organelle and compartment imaging

Cyto-Tracer constructs tagged to mitochondria, the Golgi, or another compartment track live in culture. Pairs with organelle probes for co-labelling.

Stable tracer cell lines

Packaged into virus, a Cyto-Tracer builds a stable copGFP line in primary, tumour, or stem cells. See lentiviral expression systems for packaging support.

Promoter and pathway screening

Luc-Pair and Secrete-Pair kits quantify promoter strength and response element activity. See clone collections for matching promoter reporter clones and 3'UTR target clones.

Live-cell monitoring without lysis

Secrete-Pair GLuc and GLuc/SEAP kits read out from secreted signal, so your cultures stay intact across several time points.

Frequently asked questions

Why choose between different Luc-Pair kit versions?

HS stands for High Sensitivity and HT for High Throughput. HS kits give maximal signal intensity from a small batch, though that signal decays quickly, so HS suits a single time-point read across few plates unless sample injectors are used. HT and 2.0 kits handle large sample numbers, holding signal stable over time and keeping sample-to-sample variation low.

What makes copGFP different from EGFP?

copGFP comes from the copepod Pontellina sp. and carries human-optimised codons. It is monomeric, non-toxic, and non-aggregating, and it stays stable across pH 4 to 12 in your assay without added cofactors. Brightness is roughly 1.3 times that of EGFP, with excitation at 482 nm and emission at 502 nm.

Which promoter should you choose for a Cyto-Tracer construct?

MSCV suits stem cells and haematopoietic cell types. CMV covers other, easier-to-transfect cells. Both promoters drive stable long-term expression once the construct is packaged into virus.

Can you design your own subcellular tag?

Yes. The untagged copGFP vector accepts your own targeting sequence, which lets you mark a compartment outside the existing Cyto-Tracer line.

Parent category: Cell-based assay kits

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