Hi-C reagents for chromosome-scale scaffolding of de novo genome assemblies
When you need to scaffold a de novo genome assembly into chromosome-scale scaffolds, Hi-C uses long-range chromatin-contact information to order and orient contigs. Standard in reference genome construction and non-model organism population-genomics studies.
Pick by pipeline and sample.
- Assembly pipeline. Arima Hi-C integrates with SALSA, 3D-DNA, YaHS. Verify pipeline compatibility.
- Sample type. Hi-C from fresh tissue is straightforward. FFPE or fixed tissue requires adapted protocols.
- First-time use. Use a published reference protocol on a benchmark species before tackling novel non-model organisms; Hi-C scaffolding is sensitive to library quality.
Arima supplies the platform.
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